config module

GARAGE — shared configuration and path constants.

All paths in the project should import from this file so users only need to update paths in one place.

Note

This module is the single source of truth for all paths, dataset configurations, and default hyper-parameters in GARAGE. Import it from any script to ensure consistency.

Constants

config.DATASET_CONFIG

Dictionary mapping dataset names to their file paths, loading parameters, rare-threshold, and iteration maps. See Preparing Your Data for the full schema.

config.GARAGE_DEFAULTS

Dictionary of GAT and GAN hyper-parameter defaults (epochs, learning rates, hidden-layer sizes, leakage fraction, priority weight, etc.).

DATA_DIR, CELL_TYPES_DIR, EXPRESSION_DIR, RESULTS_DIR

Absolute paths to the data, cell-types, expression-matrix, and results directories respectively, derived from the repository root.